Available for collaboration

JKBomics – AI-driven Bioinformatics & NGS Data Solutions

Empowering genomics research with scalable pipelines, intelligent analysis, and automation.

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About

Bioinformatics, elevated.

Freelance bioinformatician specializing in RNA-Seq, metagenomics, whole genome sequencing, and custom pipeline development. I integrate AI-driven approaches into every workflow — delivering scalable, reproducible, and research-grade results for both academic and industry projects.

RNA-Seq Metagenomics WGS Nextflow AI/ML Python
// workflow.nf 
process align_reads {
  input: path(reads)
  output: path("*.bam")

  """
  STAR --runMode alignReads \
    --readFilesIn ${reads}
  """
}
Pipeline ready
Services

NGS Analysis & Beyond

RNA-Seq Analysis

End-to-end pipeline: QC → Alignment → Differential Expression → Functional Analysis.

DESeq2 STAR GO/KEGG

Metagenomics

Taxonomy profiling, alpha/beta diversity, and pathway analysis for microbial communities.

Kraken2 HUMAnN QIIME2

Whole Genome Sequencing

Variant calling, SNP analysis, structural variation detection, and genome annotation.

GATK BWA SnpEff

Custom Pipelines

Nextflow-based automated workflows tailored to your research needs — reproducible and scalable.

Nextflow Docker CI/CD

AI-based Bioinformatics Tools

Smart gene and pathway interpretation powered by machine learning. Automated insight extraction from complex multi-omics data.

Tools & Projects

Open Source Work

BioCodePy-Chronicles

BioCodePy Chronicles is an interactive, story-driven bioinformatics learning game where players become scientists at the futuristic JKBomics Research HQ. Solve missions, decode genomes, and explore biological mysteries while mastering Python, R, and Shell scripting in a gamified and immersive environment.

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Gene2Function

Gene2Function is a modular, multi-page, Streamlit-based bioinformatics tool that takes gene IDs or symbols as input and provides predicted functional annotations, associated pathways, and potential disease links. Built for speed and usability, this app empowers researchers to quickly extract and explore gene-level biological insights.

View on GitHub
Nextflow Pipelines

Reproducible and scalable NGS workflows built with Nextflow for seamless deployment.

View on GitHub
Prokaryotic RNA-Seq

A comprehensive pipeline for prokaryotic RNA-Seq analysis, including quality control, alignment, transcript quantification, and differential expression. Designed for reproducibility and scalability using modern workflow practices.

View on GitHub
Why jkbomics

Built for Research

Reproducible

Containerized, versioned pipelines

AI-Integrated

ML-powered interpretation

Fast Turnaround

Efficient delivery cycles

Custom Solutions

Tailored to your data

Research-Grade

Publication-ready outputs

Looking to analyze your sequencing data or build scalable pipelines?

Let's discuss your project and find the best bioinformatics solution together.

Contact for Collaboration
Get in Touch

Contact

Send a message

Email

jkbomics@gmail.com

Open to collaborations

Academic & Industry Projects